| Episode name(s) | Song | Artist |
| Tabula Rasa | |
| Tabula Rasa | |
| House of the Rising Sun | |
| Confidence Man | |
| Solitary; This Place is Death | |
| Whatever the Case May Be | |
| ... In Translation | |
| Do No Harm | |
| The Greater Good | |
| The Greater Good | |
| Exodus, Part 2 | |
| Man of Science, Man of Faith; Adrift; Live Together, Die Alone; Flashes Before Your Eyes | |
| Everybody Hates Hugo | |
| Everybody Hates Hugo | |
| Everybody Hates Hugo | |
| Abandoned | |
| Abandoned | |
| Collision | |
| What Kate Did | |
| What Kate Did; Two for the Road; Left Behind | |
| The 23rd Psalm; Fire + Water | |
| The Hunting Party | |
| Fire + Water | |
| The Long Con; A Tale of Two Cities | |
| Maternity Leave; Whatever Happened, Happened | |
| | Episode name(s) | Song | Artist |
| The Whole Truth | |
| Lockdown | |
| Lockdown | |
| S.O.S. | |
| S.O.S. | |
| Two for the Road | |
| Live Together, Die Alone | |
| Live Together, Die Alone | |
| Live Together, Die ALone | |
| A Tale of Two Cities; One of Us | |
| A Tale of Two Cities; The Glass Ballerina; Further Instructions | |
| Further Instructions | |
| Every Man for Himself | |
| The Cost of Living | |
| The Cost of Living | |
| I Do | |
| I Do | |
| I Do | |
| Flashes Before Your Eyes | |
| Flashes Before Your Eyes; Greatest Hits | |
| Stranger in a Strange Land | |
| Tricia Tanaka is Dead; The Man Behind the Curtain | |
| Tricia Tanaka is Dead | |
| Expose | |
| One of Us | |
| | Episode name(s) | Song | Artist |
| Catch 22 | |
| Catch 22 | |
| Greatest Hits | |
| Through the Looking Glass | |
| Through the Looking Glass | |
| The Economist | |
| The Economist | |
| Eggtown | |
| Eggtown; Whatever Happened, Happened | |
| The Other Woman | |
| Meet Kevin Johnson | |
| The Shape of Things to Come | |
| Cabin Fever | |
| There's No Place Like Home, Parts 2 and 3 | |
| Because You Left | |
| The Lie | |
| Lafleur | |
| Namaste | |
| He's Our You | |
| Some Like it Hoth | |
| Some Like it Hoth | |
| The Variable | |
| The Incident, Parts 1 and 2 | |
| Pilot, Part 1; The Moth | |
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